Lakes form on the surface of the Antarctic Ice Sheet during the summer. These lakes can generate further melt, break up floating ice shelves and alter ice dynamics. Here, we describe a new automated method for mapping surface lakes and apply our technique to the Amery Ice Shelf between 2005 and 2020. Lake area is highly variable between years, driven by large-scale climate patterns. This technique will help us understand the role of Antarctic surface lakes in our warming world.