The U–Th ages of subglacial carbonate deposits from a recently exposed surface previously occupied by the disappearing glacier in the SE European Alps suggest the glacier’s presence throughout the entire Holocene. These thin deposits, formed by regelation, would have been easily eroded if exposed during previous Holocene climatic optima. The age data indicate the glacier’s present unprecedented level of retreat and the potential of subglacial carbonates to act as palaeoclimate proxies.