Meltwater runoff trapped by an ice shelf can create a freshwater lake floating directly on seawater. We show that the depth of the freshwater–seawater interface varies substantially due to changes in meltwater inflow and drainage under the ice shelf. By accounting for seasonality, the interface depth can be used to monitor long-term changes in the thickness of ice shelves. We show that the Milne Ice Shelf, Ellesmere Island, was stable before 2004, after which time the ice shelf thinned rapidly.